Tag: setup
Manage and structure scientific research experiments
This skill establishes the foundational structure for a research experiment, handling directory setup, baseline file copying, and ingesting diverse research sources. It manages all necessary bookkeeping by initializing and updating central …
Validate the Codex bridge plugin setup
This skill validates the readiness of the Codex bridge plugin within Claude Code. It checks for the installation status of `codex`, the availability of `codex exec review`, and verifies the presence of necessary artifact directories and ser…
Context7 CLI for Documentation and AI Skills Management
The Context7 CLI provides a comprehensive interface for managing AI coding agents. It allows developers to fetch current library documentation, install and generate custom coding skills, and configure the Context7 MCP for various developmen…
Setup reproducible bioinformatics environments for ENCODE
This skill provisions fully reproducible, version-pinned conda environments and associated scripts for comprehensive ENCODE data analysis. It manages dependencies across multiple modalities (RNA-seq, ChIP-seq, ATAC-seq) using tools like STA…
Configure and connect to ENCODE Project data
This skill guides users through the installation, configuration, and authentication process for the ENCODE Toolkit MCP server. It ensures the local environment is correctly connected to the ENCODE Project genomics database for subsequent da…
Local Agentic Knowledge Base Setup and Indexing
This utility provides a comprehensive, step-by-step wizard for setting up a local, agentic knowledge base. It handles backend initialization, document ingestion (including web crawling and PDF support), and integrates the resulting index wi…
setup foundation cursor rules and commands
This utility configures the local agent environment by synchronising foundation rules and commands into the .cursor/ directory. It supports two modes: creating automatic symlinks when the foundation is a git submodule, or generating indepen…
Legacy setup instructions for cursor commands
This skill provides legacy instructions for setting up cursor commands, advising users that foundation workflows have been replaced by dedicated skills. Developers should instead run the setup-cursor-copies skill to refresh rules and skills…
Comprehensive Git Pull and Environment Setup
This skill performs a full repository synchronization by committing local changes, pulling the latest origin commits, resolving merge conflicts, and executing necessary environment setup scripts, including dependency installation.
Migrate legacy cursor setup commands
This skill guides users through the deprecation of legacy cursor commands. It directs the user to run setup-cursor-copies to correctly refresh foundation rules and skills into the modern .cursor/ directory structure.
Codex Bridge Plugin Setup and Validation
This skill validates the operational readiness of the Codex bridge plugin within the Claude Code environment. It checks for necessary installations, verifies the availability of the `codex exec review` command, and confirms the presence of …
Multi-platform credential onboarding and setup
This skill provides a unified orchestration flow for setting up and migrating credentials across multiple services, including Steam, YouTube, and Spotify. It manages the entire onboarding process by invoking platform-specific skills sequent…
Setup mcp-rubber-duck for AI coding tools
This skill automates the integration of the mcp-rubber-duck MCP server across various AI coding environments, including VS Code, Cursor, and Claude. It manages platform-specific configuration files and environment variables, ensuring non-de…
Autonomous Cortex Memory System Bootstrap Tool
This tool autonomously bootstraps the Cortex memory system, verifying infrastructure, building cognitive profiles, seeding the codebase, and importing historical memories. It executes a multi-phase setup, ensuring full system consolidation …