Tools
ENCODE RNA-seq Quantification Pipeline
This tool executes a comprehensive, ENCODE-standard RNA-seq pipeline using Nextflow. It processes raw FASTQ data through STAR alignment, generating gene/transcript quantification (TPM/FPKM) and strand-specific bigWig signal tracks.
ENCODE ATAC-seq Pipeline for Chromatin Accessibility
This tool executes the full ENCODE ATAC-seq workflow, processing raw FASTQ files through alignment, Tn5 offset correction, and rigorous filtering. It generates nucleosome-free peaks and signal tracks following established ENCODE standards.
ENCODE Genomics Data Downloader and Manager
This tool facilitates the programmatic retrieval of diverse ENCODE genomics files, supporting both specific accession downloads and comprehensive batch operations. It includes advanced features such as dry-run previews, MD5 verification, an…
Annotate ENCODE Variants with ClinVar Data
This tool facilitates the cross-referencing of ENCODE functional genomic elements with ClinVar variant classifications. It supports both forward analysis (identifying variants within peaks) and reverse analysis (using ENCODE context to expl…
Local Agentic Knowledge Base Setup and Indexing
This utility provides a comprehensive, step-by-step wizard for setting up a local, agentic knowledge base. It handles backend initialization, document ingestion (including web crawling and PDF support), and integrates the resulting index wi…
Alpha Arcade Prediction Market Trading
This toolset enables interaction with Alpha Arcade prediction markets on the Algorand blockchain, allowing users to browse markets, manage orders, and trade USDC-denominated shares. It supports limit and market orders, position management, …
Ingests local files, git history, and websites
This tool provides a unified pipeline for populating the gnosis-mcp knowledge base from local files, entire Git repositories, or remote websites. It supports advanced features like embedding, chunking, and pruning stale data chunks.
evaluate retrieval quality metrics and performance
This utility measures core retrieval metrics (Hit@5, MRR, nDCG@10) against a corpus of golden queries. It compares current performance against a saved baseline and provides actionable interpretation and tuning recommendations for diagnosing…
Load usage-weighted knowledge context summary
This tool retrieves a compact, usage-weighted context summary from the knowledge base. It surfaces the most relevant documentation, optimized for session startup or specific topic primers.
Real SIM SMS Verification for AI Agents
This tool facilitates reliable SMS and OTP verification for high-security services by utilizing real physical SIM cards, bypassing common carrier-lookup restrictions that affect VoIP numbers. It provides a comprehensive lifecycle of functio…
Advanced research access to arXiv papers
This server provides comprehensive, research-grade access to arXiv, allowing developers to search by topic or author, download full texts, traverse citation graphs, and perform local semantic searches over collected papers.
Algorand Haystack Router Swap Execution Tool
This tool facilitates complex, atomic token swaps on Algorand by interacting with the Haystack Router via the Algorand MCP. It allows developers to programmatically retrieve optimal swap quotes, check asset opt-in status, and execute swaps …
Local PinRAG Knowledge Base Management Tool
This tool suite allows developers to interact with a local PinRAG knowledge base by indexing documents (PDFs, URLs, files) and executing complex queries. It provides structured methods for listing, adding, and removing documents directly th…
Automates software release and package publishing
This tool automates the entire software release lifecycle, managing version bumping across configuration files and executing the full Git workflow. It handles creating GitHub Releases and publishing the package to PyPI, subsequently updatin…
Product Plan Management for Product Managers
This comprehensive toolkit provides API access for managing the entire product lifecycle within ProductPlan. It facilitates day-to-day tasks such as updating roadmaps, tracking OKRs, triaging ideas, and coordinating feature launches.
Customer-Facing Product Roadmap and Launch Timeline
This tool generates customer-ready product roadmaps and release timelines by aggregating data on upcoming launches, feature status, and product milestones. It also facilitates the logging and tracking of customer feedback and feature reques…
Agentic tool for comprehensive Twitter/X interaction
This tool suite provides 35 MCP tools for comprehensive Twitter/X interaction, enabling agents to post, search, manage profiles, and engage with content. It operates with zero configuration, automatically detecting browser sessions without …
Stateless Twitter/X API for Autonomous Agents
This stateless API provides programmatic access to Twitter/X data via HTTP, requiring payment via x402 (USDC on Base) for every request. It is ideal for backend services or autonomous agents needing reliable, metered integration without per…
Local Agent Tool for Twitter/X Interaction
This tool provides 35 comprehensive MCP tools for interacting with Twitter/X directly from a local residential IP, eliminating the need for API keys or developer accounts. It enables agents to perform complex actions such as posting threads…
persistent memory management for ai agents
This two-tier memory system provides persistent context for AI agents, featuring a zero-latency hot cache for frequently accessed data and semantic search for cold storage. Developers can store, recall, link, and manage memories across sess…
Bazi Astrology Chart Calculation and Reading
This tool calculates the traditional Chinese Bazi (Eight Characters) chart using precise astronomical methods, including true solar time correction. It then generates a detailed, multi-faceted reading covering elemental strength, ten god re…
Persistent, Versioned Memory for AI Agents
This tool provides agents with a structured, versioned knowledge base, allowing for the storage of facts and complex summaries via keypaths. It supports semantic search, full project history tracking, and conflict detection, acting as a rob…
DaVinci Resolve MCP Server
This MCP server enables AI assistants to interface with DaVinci Resolve Studio via its official Scripting API. It facilitates automated control over projects, timelines, and colour grading, while providing capabilities for authoring Fuse, D…
Generates Octocode usage statistics dashboard
This tool generates a local HTML dashboard visualizing Octocode usage statistics, including estimated tokens saved, cache hits, and total tool calls. It processes the stats.json file to provide a comprehensive report on session performance …