Tag: sqlite
ENCODE experiment tracking and provenance management
Track and manage local collections of ENCODE experiments, including metadata, publications, and data provenance. It supports experiment comparison, citation management, and exporting datasets to CSV, TSV, or JSON formats.
recovering corrupted neotoma sqlite databases
This procedure guides the recovery of Neotoma's underlying SQLite database when integrity errors, such as malformed disk images, are encountered. It generates a verified recovered copy which must then be manually swapped into the live data …
Neotoma SQLite Database Recovery Utility
This utility checks the integrity of Neotoma's SQLite database and, if corruption is detected, executes a recovery process. It generates a verified copy that can be manually swapped back into the live data directory.
Recover Neotoma SQLite Database Corruption
This utility addresses common SQLite corruption errors (e.g., `SQLITE_CORRUPT`) encountered with Neotoma's local database files. It generates a verified recovered copy, which must then be manually validated and swapped into the live databas…
Structured Project and Task Management Tracker
This tool provides a persistent, SQLite-backed system for managing complex project hierarchies, including epics, tasks, and subtasks. It allows developers to track progress, log architectural decisions, and maintain context across multiple …
Agent Memory Protocol and Context Management
This system provides a complete, protocol-driven memory layer for agents, managing context through structured capture, semantic recall, and consolidation. It uses local SQLite embeddings to ensure persistent, context-aware operation without…
Automating SQLite Storage Schema Migrations
This skill manages the lifecycle of SQLite storage schema evolution by generating forward-only, idempotent migrations. It guides the developer through identifying schema deltas, implementing safe SQL changes, and registering updates to keep…
SQLite Database Querying and Inspection
Provides capabilities to query SQLite databases, inspect schemas, and optimise SQL execution via the Model Context Protocol. It supports database discovery, schema inspection, and read-only SQL execution.