Tag: single-cell

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

Analyzing ENCODE single-cell genomics data

This skill guides the retrieval and analysis of single-cell genomics data (scRNA-seq and scATAC-seq) from the ENCODE project. It provides detailed protocols for data structure, quality assessment, and integrating single-cell profiles with b…

ammawla/encode-toolkit single-cell genomics encode scrna-seq
tool ★ 34

Deconvolve Bulk Genomics with Single-Cell Context

This tool provides programmatic access to the CellxGene Census, enabling developers to bridge bulk ENCODE functional genomics data with cell-type-specific expression profiles. It allows for the deconvolution of broad regulatory signals by q…

ammawla/encode-toolkit single-cell genomics encod scrna-seq
skill ★ 34

ENCODE Single-Cell Genomics Data Analysis Guide

This skill guides the retrieval and analysis of single-cell genomics data (scRNA-seq and scATAC-seq) from ENCODE. It covers data structure, quality control metrics, and best practices for integrating single-cell profiles with bulk epigenomi…

ammawla/encode-toolkit single-cell encode genomics scrna-seq