Tag: quantification

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
tool ★ 34

ENCODE RNA-seq Quantification Pipeline

This tool executes a comprehensive, ENCODE-standard RNA-seq pipeline using Nextflow. It processes raw FASTQ data through STAR alignment, generating gene/transcript quantification (TPM/FPKM) and strand-specific bigWig signal tracks.

ammawla/encode-toolkit rna-seq gene-expression quantification star-alignment