Tag: peak-annotation

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

ENCODE Peak Annotation and Functional Enrichment

Annotate ENCODE genomic peaks with regulatory features and nearby genes using ChIPseeker and GREAT. The workflow enables genomic feature distribution analysis and functional enrichment via clusterProfiler.

ammawla/encode-toolkit genomics peak-annotation chip-seq bioinformatics
skill ★ 34

Annotating Peaks and Functional Enrichment of Genomics

This skill annotates ENCODE peaks by classifying them into specific genomic features (e.g., promoter, intron) using ChIPseeker, and subsequently determines their biological relevance and pathway enrichment using GREAT. It facilitates compre…

ammawla/encode-toolkit peak-annotation genomic-feature chipseeker great-enrichment