Tag: peak-aggregation

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

Aggregate comprehensive open chromatin accessibility maps

This skill builds a comprehensive union map of open chromatin regions by aggregating and merging ATAC-seq and DNase-seq narrowPeak data across multiple ENCODE experiments. It handles cross-platform variation, applies necessary filtering (su…

ammawla/encode-toolkit chromatin-accessibility atac-dnase peak-aggregation genomics
skill ★ 34

Aggregate Histone ChIP-seq Peaks Across Studies

This skill aggregates histone ChIP-seq peaks from multiple ENCODE experiments into a unified, confidence-annotated map. It manages cross-lab batch effects and applies rigorous filtering, including ENCODE blocklist removal and signal value q…

ammawla/encode-toolkit histone-mapping chip-seq peak-aggregation genomics
skill ★ 34

Aggregate Chromatin Accessibility Peaks Across Studies

This skill generates a comprehensive union map of open chromatin by merging ATAC-seq and DNase-seq narrowPeak data from multiple ENCODE experiments. It handles cross-platform variation and applies rigorous filtering and confidence annotatio…

ammawla/encode-toolkit chromatin-accessibility atac-seq dnase-seq peak-aggregation