Tag: motif-analysis
skill
★ 34
Motif discovery and enrichment analysis for peak data
This skill guides the enrichment analysis of transcription factor binding motifs in ChIP-seq and ATAC-seq peaks. It covers best practices and workflows using industry-standard suites like HOMER and MEME for both de novo and known motif disc…
skill
★ 34
Motif discovery and enrichment analysis for peak data
Performs comprehensive de novo and known motif enrichment analysis on ChIP-seq and ATAC-seq peak data using established pipelines like HOMER and MEME Suite. This skill assists in validating target factors and identifying co-regulatory bindi…
skill
★ 34
Integrating JASPAR Motifs with ENCODE ChIP-seq
Integrate JASPAR transcription factor binding profiles with ENCODE ChIP-seq peaks to validate binding targets and discover co-factors. This skill enables scanning regulatory regions for motif enrichment and assessing the impact of genomic v…