Tag: liftover

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

Genomic coordinate liftover and assembly conversion guide

This skill provides a comprehensive workflow for safely converting genomic coordinates between different assembly versions (e.g., hg19 to hg38). It guides the use of industry-standard tools like UCSC liftOver and CrossMap, ensuring full pro…

ammawla/encode-toolkit genomic-coordinates liftover assembly-conversion bioinformatics
tool ★ 34

Ensembl API for Variant and Gene Annotation

This tool interfaces with the Ensembl REST API to perform comprehensive genomic annotations, including variant consequence prediction (VEP), regulatory feature overlap, and coordinate liftover between assemblies. It also facilitates gene ID…

ammawla/encode-toolkit ensembl variant-annotation genomics liftover
skill ★ 34

genomic coordinate liftover workflow guide

This skill provides a definitive workflow for safely converting genomic coordinates between different assembly versions (e.g., hg19 to hg38). It guides the use of industry-standard tools like UCSC liftOver and CrossMap, ensuring full proven…

ammawla/encode-toolkit genomic-data coordinate-conversion liftover hg38