Tag: jaspar

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

JASPAR Motif Analysis for ChIP-seq Validation

This skill guides the validation and enrichment analysis of transcription factor binding motifs within ENCODE ChIP-seq peaks. It leverages JASPAR's curated Position Weight Matrices (PWMs) to identify co-factors and confirm the specificity o…

ammawla/encode-toolkit jaspar motif-enrichment chipseq pwm
skill ★ 34

Integrating JASPAR Motifs with ENCODE ChIP-seq

Integrate JASPAR transcription factor binding profiles with ENCODE ChIP-seq peaks to validate binding targets and discover co-factors. This skill enables scanning regulatory regions for motif enrichment and assessing the impact of genomic v…

ammawla/encode-toolkit jaspar encode chip-seq motif-analysis