Tag: gene-expression
skill
★ 34
Validate Regulatory Elements with GTEx Expression
This skill facilitates the integration of GTEx tissue expression data with ENCODE regulatory element findings, allowing developers to validate enhancer-gene links and assess tissue-specific gene activity. It enables the correlation of predi…
tool
★ 34
ENCODE RNA-seq Quantification Pipeline
This tool executes a comprehensive, ENCODE-standard RNA-seq pipeline using Nextflow. It processes raw FASTQ data through STAR alignment, generating gene/transcript quantification (TPM/FPKM) and strand-specific bigWig signal tracks.
skill
★ 34
Integrating GTEx Expression with ENCODE Data
This skill enables the integration of GTEx tissue expression data with ENCODE regulatory elements to validate enhancer-gene links and assess tissue-specific activity. It facilitates querying median TPM, eQTLs, and transcript-level expressio…