Tag: functional-genomics

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

Validate Regulatory Elements with GTEx Expression

This skill facilitates the integration of GTEx tissue expression data with ENCODE regulatory element findings, allowing developers to validate enhancer-gene links and assess tissue-specific gene activity. It enables the correlation of predi…

ammawla/encode-toolkit gtex encode gene-expression e-qtl
skill ★ 34

Functional Genomics for Disease Mechanism Research

This skill facilitates comprehensive disease research by connecting genetic association data (GWAS) with functional genomics data from ENCODE. It annotates disease-associated loci, identifies regulatory elements, and cross-references findin…

ammawla/encode-toolkit disease-research functional-genomics gwas-annotation epigenomics
skill ★ 34

annotate non-coding variants using encode data

This skill interprets non-coding genetic variation by layering ENCODE functional genomics annotations (e.g., cCREs, enhancers) onto variant sets. It supports the full post-GWAS workflow, including tissue-specific mapping, fine-mapping, and …

ammawla/encode-toolkit variant-annotation gwas non-coding encode