Tag: epigenetics

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

WGBS Pipeline: FASTQ to Methylation Calling

This skill executes the full ENCODE WGBS pipeline, processing paired-end FASTQ reads through alignment, deduplication, and methylation extraction. It generates per-CpG methylation levels in the standardized bedMethyl format, suitable for do…

ammawla/encode-toolkit wgbs bisulfite-sequencing methylation-calling bismark
skill ★ 34

Multi-omic ENCODE Data Integration Workflow

This skill orchestrates the complex process of integrating multiple ENCODE experiments, supporting multi-omic, cross-dataset, and cross-organism analyses. It guides the user through compatibility checks, normalization strategies, and file s…

ammawla/encode-toolkit multi-omics encode epigenetics data-integration