Tag: encode-experiments

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

ENCODE experiment tracking and provenance management

Track and manage local collections of ENCODE experiments, including metadata, publications, and data provenance. It supports experiment comparison, citation management, and exporting datasets to CSV, TSV, or JSON formats.

ammawla/encode-toolkit encode-experiments data-provenance metadata-management bioinformatics
skill ★ 34

Systematic ENCODE Experiment Batch Processing

Facilitates systematic batch operations across multiple ENCODE experiments, including quality control screening, bulk downloading, and comparative analysis. It provides workflows for managing large-scale data collections and generating summ…

ammawla/encode-toolkit encode-experiments batch-processing quality-control genomics