Tag: data-integration
Cross-study scRNA-seq meta-analysis and integration
This skill integrates multiple single-cell RNA-seq datasets into a unified cell atlas. It performs rigorous meta-analysis, correcting for batch effects, technical dropout, and ambient contamination to assess reproducible cell type definitio…
ENCODE Multi-omic Data Integration
Provides a framework for planning and executing integrative analyses across multiple ENCODE experiments, including multi-omic and cross-sample workflows. It assists with compatibility verification, integration strategy selection, and the re…
Cross-reference ENCODE with scientific databases
Link ENCODE genomic data to external scientific databases such as PubMed, ClinicalTrials.gov, and Open Targets. This skill facilitates building translational pipelines by connecting regulatory elements to clinical research and variant annot…
Cross-study scRNA-seq meta-analysis and integration
This skill integrates multiple single-cell RNA-seq datasets from different sources into a unified cell atlas. It performs rigorous meta-analysis, accounting for technical biases such as batch effects, ambient RNA contamination, and detectio…
Multi-omic ENCODE Data Integration Workflow
This skill orchestrates the complex process of integrating multiple ENCODE experiments, supporting multi-omic, cross-dataset, and cross-organism analyses. It guides the user through compatibility checks, normalization strategies, and file s…
NCBI GEO and ENCODE Data Connector
Search, query, and cross-reference NCBI GEO datasets with ENCODE experiments to identify complementary genomic data. The skill facilitates downloading metadata, series matrices, and supplementary files while enabling the linking of GEO acce…
Resolving ENCODE Bulk Signals with CellxGene
This skill enables the integration of CellxGene Census single-cell RNA-seq data with bulk ENCODE functional genomics experiments to resolve cell-type-specific regulatory activity. It facilitates the deconvolution of bulk signals and the val…
Mureo Marketing Account Onboarding
Automates the initial setup of Mureo accounts by generating STRATEGY.md and STATE.json files. It handles platform discovery, data source configuration, and initial marketing goal definition.
Mureo Marketing Account Initial Setup
Automates the initial setup of mureo marketing accounts by generating STRATEGY.md and STATE.json files, discovering connected advertising platforms, and establishing baseline performance metrics.