Tag: chromatin-conformation

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

ENCODE Hi-C Data Processing Pipeline

This Nextflow pipeline processes Hi-C FASTQ files to generate multi-resolution contact matrices and chromatin loop calls. It integrates BWA, pairtools, Juicer, and cooler for end-to-end chromatin conformation analysis.

ammawla/encode-toolkit hi-c nextflow genomics bioinformatics
skill ★ 34

ENCODE Hi-C Processing Pipeline

Executes the ENCODE Hi-C pipeline using Nextflow to transform FASTQ files into multi-resolution contact matrices and loop calls. The pipeline supports local, SLURM, and cloud-based deployments via Docker.

ammawla/encode-toolkit hi-c nextflow bioinformatics genomics