Tag: chipseq
skill
★ 34
Motif discovery and enrichment analysis for peak data
This skill guides the enrichment analysis of transcription factor binding motifs in ChIP-seq and ATAC-seq peaks. It covers best practices and workflows using industry-standard suites like HOMER and MEME for both de novo and known motif disc…
skill
★ 34
JASPAR Motif Analysis for ChIP-seq Validation
This skill guides the validation and enrichment analysis of transcription factor binding motifs within ENCODE ChIP-seq peaks. It leverages JASPAR's curated Position Weight Matrices (PWMs) to identify co-factors and confirm the specificity o…
skill
★ 34
Motif discovery and enrichment analysis for peak data
Performs comprehensive de novo and known motif enrichment analysis on ChIP-seq and ATAC-seq peak data using established pipelines like HOMER and MEME Suite. This skill assists in validating target factors and identifying co-regulatory bindi…