Tag: bismark

Type: All Skills Tools
Tags: mcp automation llm cli code-review unity typescript genomics game-development bioinformatics debugging documentation cloudbase ai-agents agentic-workflow devops llm-agent workflow-automation encode code-analysis
skill ★ 34

WGBS Pipeline: FASTQ to Methylation Calling

This skill executes the full ENCODE WGBS pipeline, processing paired-end FASTQ reads through alignment, deduplication, and methylation extraction. It generates per-CpG methylation levels in the standardized bedMethyl format, suitable for do…

ammawla/encode-toolkit wgbs bisulfite-sequencing methylation-calling bismark
skill ★ 34

WGBS Pipeline: FASTQ to Methylation Calling

Executes the full ENCODE Whole Genome Bisulfite Sequencing pipeline, processing paired-end FASTQ files through alignment, deduplication, and methylation extraction. It generates comprehensive per-CpG methylation levels in the standard bedMe…

ammawla/encode-toolkit wgbs methylation-calling bisulfite-seq nextflow